NetStruct Struct Reference

#include <netstruct.h>

List of all members.

Public Member Functions
	NetStruct ()
	default constructor
	NetStruct (const NetStruct &ns2)
	copy constructor.
	NetStruct (int32 nr, int32 nc)
	constructor with allocate.
	NetStruct (string &str)
	NetStruct (string &str, int32 &pos)
	constructor from string
	~NetStruct ()
	destructor
void	resize (int32 nr, int32 nc)
	resize all vectors.
string *	toString ()
	copy network data into a string
void	appendToString (string &str)
	append network data to a string
Public Attributes
array< array< int32 > * > *	IN
	substrate indices for each rea
array< array< int32 > * > *	OUT
	product indices for each rea
array< array< int32 > * > *	INH
	inhibitor indices for each rea
array< array< int32 > * > *	CMPI
	indices of substrates competively inhibited by a reaction
array< array< int32 > * > *	CAT
	catalyst indices for each rea
array< array< int32 > * > *	PRP
	propagators indices for each rea, products that propagate dpletion to inhibited substrates
array< array< int32 > * > *	INST
	substrate stoichiometries in same order as IN
array< array< int32 > * > *	OUTST
	product stoichiometries in same order as IN
array< array< int32 > * > *	CSUC
	successor reactions for each compound
array< array< int32 > * > *	CPRE
	predecessor reactions for each compound
array< int8 > *	REV
	reversibility for each reaction
int32	numR
	number of reactions
int32	numC
	number of compounds
int32	lastAdded
	reaction added last
int32	refCount
	how many Net-objects use this struct
Private Member Functions
void	initFromString (string &str, int32 &pos)
	construct from string

---

Constructor & Destructor Documentation

NetStruct::NetStruct

(

)

default constructor

NetStruct::NetStruct

(

const NetStruct &

ns2

)

copy constructor.

NetStruct::NetStruct	(	int32	nr,
		int32	nc
	)

constructor with allocate.

NetStruct::NetStruct

(

string &

str

)

NetStruct::NetStruct	(	string &	str,
		int32 &	pos
	)

constructor from string

NetStruct::~NetStruct

(

)

destructor

---

Member Function Documentation

void NetStruct::appendToString

(

string &

str

)

append network data to a string

void NetStruct::initFromString	(	string &	str,
		int32 &	pos
	)			[private]

construct from string

void NetStruct::resize	(	int32	nr,
		int32	nc
	)

resize all vectors.

string * NetStruct::toString

(

)

copy network data into a string

---

Member Data Documentation

array<array<int32>* >* NetStruct::CAT

catalyst indices for each rea

array<array<int32>* >* NetStruct::CMPI

indices of substrates competively inhibited by a reaction

array<array<int32>* >* NetStruct::CPRE

predecessor reactions for each compound

array<array<int32>* >* NetStruct::CSUC

successor reactions for each compound

array<array<int32>* >* NetStruct::IN

substrate indices for each rea

array<array<int32>* >* NetStruct::INH

inhibitor indices for each rea

array<array<int32>* >* NetStruct::INST

substrate stoichiometries in same order as IN

int32 NetStruct::lastAdded

reaction added last

int32 NetStruct::numC

number of compounds

int32 NetStruct::numR

number of reactions

array<array<int32>* >* NetStruct::OUT

product indices for each rea

array<array<int32>* >* NetStruct::OUTST

product stoichiometries in same order as IN

array<array<int32>* >* NetStruct::PRP

propagators indices for each rea, products that propagate dpletion to inhibited substrates

int32 NetStruct::refCount

how many Net-objects use this struct

array<int8>* NetStruct::REV

reversibility for each reaction

---

The documentation for this struct was generated from the following files:

• src/core/netstruct.h
• src/core/netstruct.cc