The package provides routines for the calculation of biochemical scopes. A Scope the the set of compounds that can be produced by a metabolic network if it is provide by a set of nutrient compounds (the seed). In signaling networks, the scope is the set of compounds that can be activated if a certain set of compounds (the seed) is active initially.
The package consists of core routines written in C++ for performance reasons and a perl part for easier access and programming.
The perl packages provide their own documentation in form of POD annotations. Links to html versions of these documentations can be found below.
Perl packages:
A description of the C++ core files can be found in the tabs "Classes" and "Files" on top of the page. This documentation may be useful if you want to use the c routines directly in your project. For perl usage this is not required.